Publications

Towards a functional understanding of the plant metabolome

Scientific Year: 2020 DOI:10.1016/j.pbi.2020.02.005

Authors: Monika Kosmacz, Ewelina Maria Sokolowska, Saad Bouzaa, Aleksandra Skirycz

Current Opinion in Plant Biology

plant metabolome
functional diversity

The Isolation of Stress Granules from Plant Material

Scientific Year: 2020 DOI:https://doi.org/10.1002/cppb.20118

Authors: Monika Kosmacz, Aleksandra Skirycz

Current Protocols in Plant Biology

arabidopsis thaliana
affinity purification
plant metabolome
proteome
stress granules
stress granule extraction
stress response

Identification and characterization of the heat-induced plastidial stress granules reveal new insight into Arabidopsis stress response

Scientific Year: 2020 DOI:10.3389/fpls.2020.595792

Authors: Monika Chodasiewicz, Ewelina Maria Sokolowska, Anna C Nelson-Dittrich, Aleksandra Masiuk, Juan C Moreno, Andrew D. L. Nelson, Aleksandra Skirycz

Frontiers in Plant Science

chlorophyll biosynthesis
metabolites
plastid
stress granules

A multi-OMICs approach sheds light on the higher yield phenotype and enhanced abiotic stress tolerance in tobacco lines expressing the carrot lycopene β-cyclase1 gene

Scientific Year: 2021 DOI:10.3389/fpls.2021.624365

Authors: Juan C Moreno, Silvia Martinez-Jaime, Monika Chodasiewicz, Ewelina Maria Sokolowska, Philipp Schulz, Axel Fischer, Urszula Luzarowska, Michel Havaux, Aleksandra Skirycz

Frontiers in Plant Science

Nicotiana tabacum cv Xanthi
ROS
abiotic stress
carotenoids
lycopene β-cyclase
omics
transcription factors
β-carotene

Plant Stress Granules: Trends and Beyond

Scientific Year: 2021 DOI:10.3389/fpls.2021.722643

Authors: Israel Maruri-Lopez, Nicolas E Figueroa, Itzell E Hernandez-Sanchez, Monika Chodasiewicz

Frontiers in Plant Science

stress granules
trends
dynamic membrane-less condensates
liquid-liquid phase seperation

Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity

Scientific Year: 2021 DOI:10.1038/s42003-021-01684-3

Authors: Marcin Luzarowski, Ruben Vicente, Andrei Kiselev, Mateusz Wagner, Dennis Schlossarek, Alexander Erban, Leonardo Perez de Souza, Dorothee Childs, Izabela Wojciechowska, Urszula Luzarowska, Michal Gorka, Ewelina Maria Sokolowska, Monika Chodasiewicz, Juan C Moreno, Aleksandra Brzezinska, Bhavana Vegesna, Joachim Kopka, Alisdair R Fernie, Lothar Willmitzer, Jennifer C Ewald, Aleksandra Skirycz

Communications Biology

protein-metabolite interactions
saccharomyces cerevisiae
Ser-Leu dipeptide
phosphoglycerate kinase activity

Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism

Scientific Year: 2021 DOI:10.15252/embj.2020106800

Authors: Juan C Moreno, Bruno E Rojas, Ruben Vicente, Michal Gorka, Timon Matz, Monika Chodasiewicz, Juan S Peralta-Ariza, Youjun Zhang, Saleh Alseekh, Dorothee Childs, Marcin Luzarowski, Zoran Nikoloski, Raz Zarivach, Dirk Walther, Matias D Hartman, Carlos M Figueroa, Alberto A Iglesias, Alisdair R Fernie, Aleksandra Skirycz

arabidopsis
GAPDH
NADPH
central carbon metabolism
dipeptides

A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato

Scientific Year: 2022 DOI:https://doi.org/10.1016/j.ymben.2022.01.004

Authors: Jianing Mi, Jose G Vallarino, Ivan Petrik, Ondrej Novak, Sandra M Correa, Monika Chodasiewicz, Michel Havaux, Manuel Rodriguez-Concepcion, Salim Al-Babili, Alisdair R Fernie, Aleksandra Skirycz, Juan C Moreno

Metabolic Engineering

abiotic stress
apocarotenoids
biomass and yield
carotenoids
metabolic engineering
metabolites and lipids
phytohormones

A New Approach to the Study of Plastidial Stress Granules: The Integrated Use of Arabidopsis thaliana and Chlamydomonas reinhardtii as Model Organisms

Scientific Year: 2022 DOI:10.3390/plants11111467

Authors: Fareena Rafique, Kyle J Lauersen, Monika Chodasiewicz, Nicolas E Figueroa

Plants

arabidopsis
chlamydomonas
abiotic stress
chloroplast
liquid-liquid phase seperation
stress granules
stress response

Affinity Purification Protocol Starting with a Small Molecule as Bait

Scientific Year: 2022 DOI:10.1007/978-1-0716-2624-5_2

Authors: Nicolas E Figueroa, Itzell E Hernandez-Sanchez, Israel Maruri-Lopez, Monika Chodasiewicz

Cell-Wide Identification of Metabolite-Protein Interactions 11-19, Methods in Molecular Biology Book

affinity purification
mass spectrometry
metabolites
ligand
protein-metabolite interactions
protein-protein interactions

Landscape of biomolecular condensates in heat stress responses

Scientific Year: 2022 DOI:10.3389/fpls.2022.1032045

Authors: Violeta Londono Velez, Fatema Alquraish, Ibrahim Tarbiyyah, Fareena Rafique, Duruo Mao, Monika Chodasiewicz

Frontiers in Plant Science

LLPS
biomolecular condensates
heat stress response
signaling
stress granules

Composition and function of stress granules and P-bodies in plants

Scientific Year: 2024 DOI:10.1016/j.semcdb.2022.11.008

Authors: Alyssa Kearly, Andrew D. L. Nelson, Aleksandra Skirycz, Monika Chodasiewicz

Seminars in Cell & Developmental Biology

biomolecular condensates
metabolites
P-bodies
proteins
stress granules
mRNA

2′,3′-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana

Scientific Year: 2022 DOI:10.1093/plphys/kiac013

Authors: Monika Chodasiewicz, Olga Kerber, Michal Gorka, Juan C Moreno, Israel Maruri-Lopez, Romina I Minen, Arun Sampathkumar, Andrew D. L. Nelson, Aleksandra Skirycz

Plant Physiology

2',3'-cAMP
arabidopsis thaliana
stress response
RNA degradation