Publications

The Isolation of Stress Granules from Plant Material

Scientific Year: 2020 DOI:https://doi.org/10.1002/cppb.20118

Authors: Monika Kosmacz, Aleksandra Skirycz

Current Protocols in Plant Biology

arabidopsis thaliana
affinity purification
plant metabolome
proteome
stress granules
stress granule extraction
stress response

Identification and characterization of the heat-induced plastidial stress granules reveal new insight into Arabidopsis stress response

Scientific Year: 2020 DOI:10.3389/fpls.2020.595792

Authors: Monika Chodasiewicz, Ewelina Maria Sokolowska, Anna C Nelson-Dittrich, Aleksandra Masiuk, Juan C Moreno, Andrew D. L. Nelson, Aleksandra Skirycz

Frontiers in Plant Science

chlorophyll biosynthesis
metabolites
plastid
stress granules

Protein and metabolite composition of Arabidopsis stress granules

Scientific Year: 2019 DOI:10.1111/nph.15690

Authors: Monika Kosmacz, Michal Gorka, Stephan Schmidt, Marcin Luzarowski, Juan C Moreno, Jagoda Szlachetko, Ewa Leniak, Ewelina Maria Sokolowska, Kostika Sofroni, Arp Schnittger, Aleksandra Skirycz

New Phytologist

arabidopsis thaliana
CDKA1
affinity purification
stress granule extraction
stress granule metabolome
stress granule proteome
stress response

Interaction of 2’,3’-cAMP with Rbp47b plays a role in stress granule formation

Scientific Year: 2018 DOI:10.1104/pp.18.00285

Authors: Kosmacz M., Luzarowski M., Kerber O., Leniak E., Gutiérrez-Beltrán E., MorenoJ.C., Gorka M., Szlachetko J., Veyel D., Graf A., Skirycz A.

Plant Physiology

2',3'-cAMP
RNA degradation
stress granule formation
Rbp47b

PROMIS, global analysis of PROtein-Metabolite Interactions using Size separation in Arabidopsis thaliana

Scientific Year: 2018 DOI:10.1074/jbc.RA118.003351

Authors: Daniel Veyel, Ewelina Maria Sokolowska, Juan C Moreno, Sylwia Kierszniowska, Justyna Cichon, Izabela Wojciechowska, Marcin Luzarowski, Monika Kosmacz, Jagoda Szlachetko, Michal Gorka, Michael Meret, Alexander Graf, Etienne H Meyer, Lothar Willmitzer, Aleksandra Skirycz

Journal of Biological Chemistry

chromatography
ligand-binding protein
metabolomics
protein-protein interactions
protein-small molecule interactions
proteomics
size-exclusion chromatography
systems biology

Low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in Arabidopsis thaliana

Scientific Year: 2018 DOI:10.1073/pnas.1809429115

Authors: Romy R. Schmidt, Martin Fulda, Melanie V. Paul, Max Anders, Frederic Plum, Daniel A. Weits, Monika Kosmacz, Tony R. Larson, Ian A. Graham, Gerrit T. S. Beemster, Francesco Licausi, Peter Geigenberger, Jos H. Schippers, Joost T. van Dongen

PNAS

low-oxygen response
ATP-dependent shift
oleoyl-CoA
arabidopsis

System-wide detection of protein-small molecule complexes suggests extensive metabolite regulation in plants

Scientific Year: 2017 DOI:10.1038/srep42387

Authors: Daniel Veyel, Sylwia Kierszniowska, Monika Kosmacz, Ewelina Maria Sokolowska, Aenne Michaelis, Marcin Luzarowski, Jagoda Szlachetko, Lothar Willmitzer, Aleksandra Skirycz

Scientific Reports

small molecule complexes
metabolite regulation
protein detection

Affinity purification with metabolomic and proteomic analysis unravels diverse roles of nucleoside diphosphate kinases

Scientific Year: 2017 DOI:10.1093/jxb/erx183

Authors: Marcin Luzarowski, Monika Kosmacz, Ewelina Maria Sokolowska, Weronika Jasinska, Lothar Willmitzer, Daniel Veyel, Aleksandra Skirycz

Journal of experimental botany

affinity purification
arabidopsis thaliana
NDPK
glutathionylation
metabolites
plant
protein-metabolite interactions
protein-protein interactions

Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana

Scientific Year: 2015 DOI:10.1016/j.plantsci.2015.03.008

Authors: Liem T. Bui, Beatrice Giuntoli, Monika Kosmacz, Sandro Parlanti, Francesco Licausi

Plant Science

arabidopsis thaliana
ethylene response factor
hypoxia
transcriptional activation

Oxygen perception in plants

Scientific Year: 2014 DOI:10.1007/978-3-7091-1254-0_1

Authors: Monika Kosmacz, Daan A. Weits

Low oxygen stress in plants. Springer, Heidelberg.

oxygen
oxygen sensing

Plant cysteine oxidases control the oxygen-dependent branch of the N-end rule pathway

Scientific Year: 2014 DOI:10.1038/ncomms4425

Authors: Daan A. Weits, Beatrice Giuntoli, Monika Kosmacz, Sandro Parlanti, Hans-Michael Hubberten, Heike Riegler, Rainer Hoefgen, Pierdomenico Perata, Joost T. van Dongen, Francesco Licausi

Nature communications

cysteine oxidases
N-end rule pathway
selective proteolysis

A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis

Scientific Year: 2014 DOI:10.1371/journal.pbio.1001950

Authors: Beatrice Giuntoli, Seung Cho Lee, Francesco Licausi, Monika Kosmacz, Teruko Oosumi, Joost T. van Dongen, Julia Bailey-Serres, Pierdomenico Perata

Plos Biology

trihelix DNA
binding protein
hypoxia
arabidopsis
transcriptional activation
ethylene-responsive
normoxia

The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration

Scientific Year: 2014 DOI:10.1111/pce.12493

Authors: Monika Kosmacz, Sandro Parlanti, Markus Schwarzlander, Friedrich Kragler, Francesco Licausi, Joost T. van Dongen

Plant Cell and Environment

arabidopsis
ethylene response factor
N-end rule pathway
anoxia
confocal laser scanning microscopy
hypoxia
oxygen sensing

Missexpression of a Chloroplast Aspartyl Protease Leads to Severe Growth Defects and Alters Carbohydrate Metabolism in Arabidopsis

Scientific Year: 2012 ISSN:1237–1250 DOI:10.1104/pp.112.204016

Authors: Eleonora Paparelli, Silvia Gonzali, Sandro Parlanti, Giacomo Novi, Federico M. Giorgi, Francesco Licausi, Regina Feil, John E. Lunn, Henrike Brust, Joost T. van Dongen, Martin Steup, Pierdomenico Perata, Monika Kosmacz

Plant Physiology 160: 1237-1250

chloroplast
aspartyl
protease
growth defects
carbohydrate metabolism
arabidopsis

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization

Scientific Year: 2011 DOI:10.1038/nature10536

Authors: Francesco Licausi, Monika Kosmacz, Daan A. Weits, Beatrice Giuntoli, Federico M. Giorgi, Laurentius A. C. J. Voesenek, Pierdomenico Perata, Joost T. van Dongen

Nature 479, 419-422

oxygen sensing
N-end rule pathway
protein destabilization
eukaryotic organisms
respiratory energy production